J3_8FKV_011

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8FKV|1|L3|A|218, 8FKV|1|L3|G|219, 8FKV|1|L3|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKV|1|L3|C|196
8FKV|1|L3|A|197
8FKV|1|L3|A|198
8FKV|1|L3|G|199
*
8FKV|1|L3|C|215
8FKV|1|L3|C|216
8FKV|1|L3|C|217
8FKV|1|L3|A|218
8FKV|1|L3|G|219
8FKV|1|L3|C|220
8FKV|1|L3|C|221
8FKV|1|L3|C|222
8FKV|1|L3|G|223
8FKV|1|L3|U|224
8FKV|1|L3|G|225
8FKV|1|L3|G|226
8FKV|1|L3|A|227
8FKV|1|L3|C|228
*
8FKV|1|L3|G|240
8FKV|1|L3|G|241
8FKV|1|L3|U|242
8FKV|1|L3|A|243
8FKV|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain NQ

WD repeat-containing protein 74

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16