J3_8FKX_006

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CA*UUGAAAAG*CG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKX_006 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.0866

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8FKX|1|L1|C|19
8FKX|1|L1|A|20
*
8FKX|1|L3|U|380
8FKX|1|L3|U|381
8FKX|1|L3|G|382
8FKX|1|L3|A|383
8FKX|1|L3|A|384
8FKX|1|L3|A|385
8FKX|1|L3|A|386
8FKX|1|L3|G|387
*
8FKX|1|L3|C|414
8FKX|1|L3|G|415

Current chains

Chain L1

5.8S rRNA

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4