J3_8FKY_004

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8FKY|1|L3|U|2554, 8FKY|1|L3|U|2761, 8FKY|1|L3|U|2763, 8FKY|1|L3|A|2764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKY|1|L3|A|2551
8FKY|1|L3|G|2552
8FKY|1|L3|A|2553
8FKY|1|L3|U|2554
8FKY|1|L3|G|2555
*
8FKY|1|L3|C|2572
8FKY|1|L3|A|2573
8FKY|1|L3|G|2574
8FKY|1|L3|U|2575
*
8FKY|1|L3|A|2757
8FKY|1|L3|G|2758
8FKY|1|L3|G|2759
8FKY|1|L3|G|2760
8FKY|1|L3|U|2761
8FKY|1|L3|G|2762
8FKY|1|L3|U|2763
8FKY|1|L3|A|2764
8FKY|1|L3|A|2765
8FKY|1|L3|A|2766
8FKY|1|L3|U|2767

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L27

Chain SI

60S ribosomal protein L7-like 1

Chain SM

Pescadillo homolog

Chain SS

Ribosome biogenesis protein BOP1