J3_8FOM_056

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CCAUAG*CGC*GUCG

Length

13 nucleotides

Bulged bases

8FOM|1|YB|U|14, 8FOM|1|YB|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FOM|1|YB|C|11
8FOM|1|YB|C|12
8FOM|1|YB|A|13
8FOM|1|YB|U|14
8FOM|1|YB|A|15
8FOM|1|YB|G|16
*
8FOM|1|YB|C|68
8FOM|1|YB|G|69
8FOM|1|YB|C|70
*
8FOM|1|YB|G|106
8FOM|1|YB|U|107
8FOM|1|YB|C|108
8FOM|1|YB|G|109

Current chains

Chain YB

5S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YS

50S ribosomal protein L18

Chain YZ

50S ribosomal protein L25