J3_8FON_020

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

8FON|1|RA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_020 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0763

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8FON|1|RA|C|1306
8FON|1|RA|A|1307
8FON|1|RA|A|1308
8FON|1|RA|G|1309
*
8FON|1|RA|C|1605
8FON|1|RA|G|1606
8FON|1|RA|C|1607
8FON|1|RA|A|1608
8FON|1|RA|A|1609
8FON|1|RA|A|1610
8FON|1|RA|C|1611
*
8FON|1|RA|G|1620
8FON|1|RA|U|1621
8FON|1|RA|G|1622

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34