J3_8FR8_002

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8FR8|1|A|U|801, 8FR8|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FR8_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0931

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|U|798
8FR8|1|A|G|799
8FR8|1|A|A|800
8FR8|1|A|U|801
8FR8|1|A|C|802
8FR8|1|A|U|803
8FR8|1|A|A|804
*
8FR8|1|A|U|888
8FR8|1|A|A|889
8FR8|1|A|G|890
*
8FR8|1|A|C|906
8FR8|1|A|A|907
8FR8|1|A|A|908
8FR8|1|A|A|909

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 0

50S ribosomal protein L34

Chain K

50S ribosomal protein L2

Chain M

50S ribosomal protein L4