J3_8FR8_014
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FR8_014 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0902
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.2
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
8FR8|1|a|C|918
8FR8|1|a|A|919
8FR8|1|a|A|920
8FR8|1|a|G|921
*
8FR8|1|a|C|1326
8FR8|1|a|U|1327
8FR8|1|a|A|1328
8FR8|1|a|G|1329
8FR8|1|a|U|1330
8FR8|1|a|A|1331
8FR8|1|a|A|1332
*
8FR8|1|a|U|1355
8FR8|1|a|G|1356
8FR8|1|a|A|1357
8FR8|1|a|A|1358
8FR8|1|a|U|1359
8FR8|1|a|A|1360
8FR8|1|a|C|1361
8FR8|1|a|G|1362
Current chains
- Chain a
- 16S rRNA (1511-MER)
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S9
Coloring options: