J3_8FTO_031

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8FTO|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FTO_031 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0394

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8FTO|1|a|G|297
8FTO|1|a|G|298
8FTO|1|a|A|299
8FTO|1|a|A|300
8FTO|1|a|G|301
*
8FTO|1|a|C|316
8FTO|1|a|G|317
8FTO|1|a|C|318
8FTO|1|a|G|319
8FTO|1|a|A|320
8FTO|1|a|U|321
8FTO|1|a|A|322
8FTO|1|a|C|323
8FTO|1|a|A|324
8FTO|1|a|G|325
*
8FTO|1|a|C|337
8FTO|1|a|G|338
8FTO|1|a|U|339
8FTO|1|a|A|340
8FTO|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24