3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
8FZD|1|A|U|686, 8FZD|1|A|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZD_001 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.0865
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8FZD|1|A|U|683
8FZD|1|A|G|684
8FZD|1|A|A|685
8FZD|1|A|U|686
8FZD|1|A|C|687
8FZD|1|A|U|688
8FZD|1|A|A|689
*
8FZD|1|A|U|773
8FZD|1|A|G|774
8FZD|1|A|G|775
*
8FZD|1|A|C|791
8FZD|1|A|A|792
8FZD|1|A|A|793
8FZD|1|A|A|794

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain C
50S ribosomal protein L2

Coloring options:


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