J3_8FZD_023

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

8FZD|1|A|U|72, 8FZD|1|A|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZD_023 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0816

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZD|1|A|A|56
8FZD|1|A|C|57
*
8FZD|1|A|G|70
8FZD|1|A|A|71
8FZD|1|A|U|72
8FZD|1|A|A|73
8FZD|1|A|A|74
8FZD|1|A|G|75
8FZD|1|A|C|76
*
8FZD|1|A|G|110
8FZD|1|A|A|111
8FZD|1|A|U|112
8FZD|1|A|U|113
8FZD|1|A|U|114

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L29

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23