3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
8FZD|1|A|U|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZD_024 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.0655
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8FZD|1|A|G|297
8FZD|1|A|G|298
8FZD|1|A|A|299
8FZD|1|A|A|300
8FZD|1|A|G|301
*
8FZD|1|A|C|316
8FZD|1|A|G|317
8FZD|1|A|C|318
8FZD|1|A|G|319
8FZD|1|A|A|320
8FZD|1|A|U|321
8FZD|1|A|A|322
8FZD|1|A|C|323
8FZD|1|A|A|324
8FZD|1|A|G|325
*
8FZD|1|A|C|337
8FZD|1|A|G|338
8FZD|1|A|U|339
8FZD|1|A|A|340
8FZD|1|A|C|341

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain W
50S ribosomal protein L24

Coloring options:


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