J3_8FZD_024
3D structure
- PDB id
- 8FZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 8FZD|1|A|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZD_024 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.0655
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FZD|1|A|G|297
8FZD|1|A|G|298
8FZD|1|A|A|299
8FZD|1|A|A|300
8FZD|1|A|G|301
*
8FZD|1|A|C|316
8FZD|1|A|G|317
8FZD|1|A|C|318
8FZD|1|A|G|319
8FZD|1|A|A|320
8FZD|1|A|U|321
8FZD|1|A|A|322
8FZD|1|A|C|323
8FZD|1|A|A|324
8FZD|1|A|G|325
*
8FZD|1|A|C|337
8FZD|1|A|G|338
8FZD|1|A|U|339
8FZD|1|A|A|340
8FZD|1|A|C|341
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain W
- 50S ribosomal protein L24
Coloring options: