J3_8FZD_027

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGGCUUUGAAGUG*CAUGGAGCCGACCUU*AAUAC

Length

35 nucleotides

Bulged bases

8FZD|1|A|A|2126, 8FZD|1|A|U|2132, 8FZD|1|A|A|2171, 8FZD|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZD|1|A|G|2124
8FZD|1|A|G|2125
8FZD|1|A|A|2126
8FZD|1|A|G|2127
8FZD|1|A|G|2128
8FZD|1|A|C|2129
8FZD|1|A|U|2130
8FZD|1|A|U|2131
8FZD|1|A|U|2132
8FZD|1|A|G|2133
8FZD|1|A|A|2134
8FZD|1|A|A|2135
8FZD|1|A|G|2136
8FZD|1|A|U|2137
8FZD|1|A|G|2138
*
8FZD|1|A|C|2153
8FZD|1|A|A|2154
8FZD|1|A|U|2155
8FZD|1|A|G|2156
8FZD|1|A|G|2157
8FZD|1|A|A|2158
8FZD|1|A|G|2159
8FZD|1|A|C|2160
8FZD|1|A|C|2161
8FZD|1|A|G|2162
8FZD|1|A|A|2163
8FZD|1|A|C|2164
8FZD|1|A|C|2165
8FZD|1|A|U|2166
8FZD|1|A|U|2167
*
8FZD|1|A|A|2170
8FZD|1|A|A|2171
8FZD|1|A|U|2172
8FZD|1|A|A|2173
8FZD|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA