J3_8FZE_001

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8FZE|1|A|U|686, 8FZE|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZE_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0794

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZE|1|A|U|683
8FZE|1|A|G|684
8FZE|1|A|A|685
8FZE|1|A|U|686
8FZE|1|A|C|687
8FZE|1|A|U|688
8FZE|1|A|A|689
*
8FZE|1|A|U|773
8FZE|1|A|G|774
8FZE|1|A|G|775
*
8FZE|1|A|C|791
8FZE|1|A|A|792
8FZE|1|A|A|793
8FZE|1|A|A|794

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2