J3_8FZF_008
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8FZF|1|A|A|2518, 8FZF|1|A|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZF_008 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.1348
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FZF|1|A|C|2517
8FZF|1|A|A|2518
8FZF|1|A|U|2519
8FZF|1|A|C|2520
*
8FZF|1|A|G|2545
8FZF|1|A|U|2546
8FZF|1|A|A|2547
*
8FZF|1|A|U|2561
8FZF|1|A|U|2562
8FZF|1|A|U|2563
8FZF|1|A|A|2564
8FZF|1|A|A|2565
8FZF|1|A|A|2566
8FZF|1|A|G|2567
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L14
Coloring options: