J3_8FZF_010
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8FZF|1|B|U|14, 8FZF|1|B|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZF_010 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.1098
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8FZF|1|B|G|10
8FZF|1|B|C|11
8FZF|1|B|A|12
8FZF|1|B|G|13
8FZF|1|B|U|14
8FZF|1|B|A|15
8FZF|1|B|G|16
*
8FZF|1|B|C|68
8FZF|1|B|G|69
8FZF|1|B|C|70
*
8FZF|1|B|G|106
8FZF|1|B|G|107
8FZF|1|B|A|108
8FZF|1|B|A|109
8FZF|1|B|C|110
Current chains
- Chain B
- 5S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L18
- Chain Y
- 50S ribosomal protein L27
Coloring options: