J3_8FZF_016

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAU*AGAC*GGUG

Length

11 nucleotides

Bulged bases

8FZF|1|a|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZF_016 not in the Motif Atlas

Geometric match to J3_5J7L_010

Geometric discrepancy: 0.203

The information below is about J3_5J7L_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8FZF|1|a|U|1116
8FZF|1|a|A|1117
8FZF|1|a|U|1118
*
8FZF|1|a|A|1155
8FZF|1|a|G|1156
8FZF|1|a|A|1157
8FZF|1|a|C|1158
*
8FZF|1|a|G|1181
8FZF|1|a|G|1182
8FZF|1|a|U|1183
8FZF|1|a|G|1184

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain i

Small ribosomal subunit protein uS9

Chain j

30S ribosomal protein S10

Chain n

Small ribosomal subunit protein uS14