3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
8FZF|1|A|A|2388, 8FZF|1|A|U|2390, 8FZF|1|A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZF_024 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.1009
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8FZF|1|A|G|2282
8FZF|1|A|C|2283
8FZF|1|A|A|2284
*
8FZF|1|A|U|2384
8FZF|1|A|C|2385
8FZF|1|A|A|2386
8FZF|1|A|U|2387
8FZF|1|A|A|2388
8FZF|1|A|G|2389
8FZF|1|A|U|2390
8FZF|1|A|G|2391
8FZF|1|A|A|2392
8FZF|1|A|U|2393
8FZF|1|A|C|2394
8FZF|1|A|C|2395
*
8FZF|1|A|G|2421
8FZF|1|A|C|2422
8FZF|1|A|U|2423
8FZF|1|A|C|2424
8FZF|1|A|A|2425
8FZF|1|A|A|2426
8FZF|1|A|C|2427

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 5
Large ribosomal subunit protein bL33
Chain 7
50S ribosomal protein L35
Chain N
50S ribosomal protein L15
Chain Y
50S ribosomal protein L27
Chain x
Transfer RNA; tRNA

Coloring options:


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