3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZF_033 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.1873
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

8FZF|1|a|C|990
8FZF|1|a|U|991
8FZF|1|a|U|992
8FZF|1|a|G|993
8FZF|1|a|A|994
8FZF|1|a|C|995
8FZF|1|a|A|996
8FZF|1|a|U|997
*
8FZF|1|a|A|1044
8FZF|1|a|C|1045
8FZF|1|a|A|1046
8FZF|1|a|G|1047
*
8FZF|1|a|C|1210
8FZF|1|a|U|1211
8FZF|1|a|U|1212
8FZF|1|a|A|1213
8FZF|1|a|C|1214
8FZF|1|a|G|1215

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain n
Small ribosomal subunit protein uS14

Coloring options:


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