J3_8FZG_001

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8FZG|1|A|U|686, 8FZG|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZG_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0892

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZG|1|A|U|683
8FZG|1|A|G|684
8FZG|1|A|A|685
8FZG|1|A|U|686
8FZG|1|A|C|687
8FZG|1|A|U|688
8FZG|1|A|A|689
*
8FZG|1|A|U|773
8FZG|1|A|G|774
8FZG|1|A|G|775
*
8FZG|1|A|C|791
8FZG|1|A|A|792
8FZG|1|A|A|793
8FZG|1|A|A|794

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2