J3_8FZH_025

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZH_025 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1315

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8FZH|1|A|U|1344
8FZH|1|A|C|1345
8FZH|1|A|G|1346
8FZH|1|A|A|1347
8FZH|1|A|C|1348
8FZH|1|A|C|1349
*
8FZH|1|A|G|1382
8FZH|1|A|A|1383
8FZH|1|A|A|1384
8FZH|1|A|A|1385
*
8FZH|1|A|U|1402
8FZH|1|A|A|1403

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L23