J3_8FZJ_001

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8FZJ|1|A|U|686, 8FZJ|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZJ_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0742

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8FZJ|1|A|U|683
8FZJ|1|A|G|684
8FZJ|1|A|A|685
8FZJ|1|A|U|686
8FZJ|1|A|C|687
8FZJ|1|A|U|688
8FZJ|1|A|A|689
*
8FZJ|1|A|U|773
8FZJ|1|A|G|774
8FZJ|1|A|G|775
*
8FZJ|1|A|C|791
8FZJ|1|A|A|792
8FZJ|1|A|A|793
8FZJ|1|A|A|794

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2