J3_8FZJ_023

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8FZJ|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZJ_023 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.066

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8FZJ|1|A|G|297
8FZJ|1|A|G|298
8FZJ|1|A|A|299
8FZJ|1|A|A|300
8FZJ|1|A|G|301
*
8FZJ|1|A|C|316
8FZJ|1|A|G|317
8FZJ|1|A|C|318
8FZJ|1|A|G|319
8FZJ|1|A|A|320
8FZJ|1|A|U|321
8FZJ|1|A|A|322
8FZJ|1|A|C|323
8FZJ|1|A|A|324
8FZJ|1|A|G|325
*
8FZJ|1|A|C|337
8FZJ|1|A|G|338
8FZJ|1|A|U|339
8FZJ|1|A|A|340
8FZJ|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24