J3_8G29_027

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCAUAG*CGC*GUCG

Length

13 nucleotides

Bulged bases

8G29|1|2B|U|14, 8G29|1|2B|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G29|1|2B|C|11
8G29|1|2B|C|12
8G29|1|2B|A|13
8G29|1|2B|U|14
8G29|1|2B|A|15
8G29|1|2B|G|16
*
8G29|1|2B|C|68
8G29|1|2B|G|69
8G29|1|2B|C|70
*
8G29|1|2B|G|107
8G29|1|2B|U|108
8G29|1|2B|C|109
8G29|1|2B|G|110

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Z

50S ribosomal protein L25