3D structure

PDB id
8G29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
8G29|1|2a|A|975, 8G29|1|2a|G|976, 8G29|1|2a|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G29_031 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0588
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8G29|1|2a|U|955
8G29|1|2a|U|956
8G29|1|2a|U|957
8G29|1|2a|A|958
8G29|1|2a|A|959
8G29|1|2a|U|960
8G29|1|2a|U|961
8G29|1|2a|C|962
*
8G29|1|2a|G|973
8G29|1|2a|A|974
8G29|1|2a|A|975
8G29|1|2a|G|976
8G29|1|2a|A|977
8G29|1|2a|A|978
8G29|1|2a|C|979
8G29|1|2a|C|980
8G29|1|2a|U|981
8G29|1|2a|U|982
8G29|1|2a|A|983
8G29|1|2a|C|984
*
8G29|1|2a|G|1221
8G29|1|2a|G|1222
8G29|1|2a|C|1223
8G29|1|2a|G|1224
8G29|1|2a|A|1225

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2j
30S ribosomal protein S10
Chain 2m
30S ribosomal protein S13
Chain 2n
30S ribosomal protein S14 type Z
Chain 2s
30S ribosomal protein S19
Chain 2w
Transfer RNA; tRNA

Coloring options:


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