J3_8G2B_016

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2B_016 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.4241

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2B|1|1a|G|1002
8G2B|1|1a|G|1003
8G2B|1|1a|A|1004
8G2B|1|1a|A|1005
8G2B|1|1a|C|1006
*
8G2B|1|1a|G|1023
8G2B|1|1a|G|1024
8G2B|1|1a|U|1025
8G2B|1|1a|G|1026
8G2B|1|1a|C|1027
8G2B|1|1a|C|1028
*
8G2B|1|1a|G|1033
8G2B|1|1a|G|1034
8G2B|1|1a|A|1035
8G2B|1|1a|G|1036
8G2B|1|1a|C|1037
8G2B|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains