J3_8G2B_042

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAG*CUUUAAAGAGUG*CUCAC

Length

21 nucleotides

Bulged bases

8G2B|1|1A|U|1083, 8G2B|1|1A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2B|1|1A|G|1055
8G2B|1|1A|G|1056
8G2B|1|1A|A|1057
8G2B|1|1A|G|1058
*
8G2B|1|1A|C|1080
8G2B|1|1A|U|1081
8G2B|1|1A|U|1082
8G2B|1|1A|U|1083
8G2B|1|1A|A|1084
8G2B|1|1A|A|1085
8G2B|1|1A|A|1086
8G2B|1|1A|G|1087
8G2B|1|1A|A|1088
8G2B|1|1A|G|1089
8G2B|1|1A|U|1090
8G2B|1|1A|G|1091
*
8G2B|1|1A|C|1100
8G2B|1|1A|U|1101
8G2B|1|1A|C|1102
8G2B|1|1A|A|1103
8G2B|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36