J3_8G2B_074

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

8G2B|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2B_074 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1352

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G2B|1|2a|C|1116
8G2B|1|2a|G|1117
8G2B|1|2a|C|1118
*
8G2B|1|2a|G|1155
8G2B|1|2a|G|1156
8G2B|1|2a|A|1157
8G2B|1|2a|C|1158
8G2B|1|2a|U|1159
8G2B|1|2a|G|1160
8G2B|1|2a|C|1161
*
8G2B|1|2a|G|1175
8G2B|1|2a|A|1176
8G2B|1|2a|G|1177
8G2B|1|2a|G|1178
8G2B|1|2a|A|1179
8G2B|1|2a|A|1180
8G2B|1|2a|G|1181
8G2B|1|2a|G|1182
8G2B|1|2a|A|1183
8G2B|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z