J3_8G2C_074

3D structure

PDB id

8G2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

8G2C|1|2a|G|1026, 8G2C|1|2a|C|1037

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2C|1|2a|G|1002
8G2C|1|2a|G|1003
8G2C|1|2a|A|1004
8G2C|1|2a|A|1005
8G2C|1|2a|C|1006
*
8G2C|1|2a|G|1023
8G2C|1|2a|G|1024
8G2C|1|2a|U|1025
8G2C|1|2a|G|1026
8G2C|1|2a|C|1027
8G2C|1|2a|C|1028
*
8G2C|1|2a|G|1033
8G2C|1|2a|G|1034
8G2C|1|2a|A|1035
8G2C|1|2a|G|1036
8G2C|1|2a|C|1037
8G2C|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains