J3_8G2D_029

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

8G2D|1|2a|A|975, 8G2D|1|2a|G|976, 8G2D|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2D_029 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0849

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8G2D|1|2a|U|955
8G2D|1|2a|U|956
8G2D|1|2a|U|957
8G2D|1|2a|A|958
8G2D|1|2a|A|959
8G2D|1|2a|U|960
8G2D|1|2a|U|961
8G2D|1|2a|C|962
*
8G2D|1|2a|G|973
8G2D|1|2a|A|974
8G2D|1|2a|A|975
8G2D|1|2a|G|976
8G2D|1|2a|A|977
8G2D|1|2a|A|978
8G2D|1|2a|C|979
8G2D|1|2a|C|980
8G2D|1|2a|U|981
8G2D|1|2a|U|982
8G2D|1|2a|A|983
8G2D|1|2a|C|984
*
8G2D|1|2a|G|1221
8G2D|1|2a|G|1222
8G2D|1|2a|C|1223
8G2D|1|2a|G|1224
8G2D|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA