J3_8G2D_030

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2D_030 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1852

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8G2D|1|2a|C|990
8G2D|1|2a|U|991
8G2D|1|2a|U|992
8G2D|1|2a|G|993
*
8G2D|1|2a|C|1045
8G2D|1|2a|A|1046
8G2D|1|2a|G|1047
*
8G2D|1|2a|C|1210
8G2D|1|2a|U|1211
8G2D|1|2a|U|1212
8G2D|1|2a|A|1213
8G2D|1|2a|C|1214
8G2D|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z