J3_8G34_012

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G34_012 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0915

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8G34|1|v|C|936
8G34|1|v|A|937
8G34|1|v|A|938
8G34|1|v|G|939
*
8G34|1|v|C|1344
8G34|1|v|U|1345
8G34|1|v|A|1346
8G34|1|v|G|1347
8G34|1|v|U|1348
8G34|1|v|A|1349
8G34|1|v|A|1350
*
8G34|1|v|U|1372
8G34|1|v|G|1373
8G34|1|v|A|1374
8G34|1|v|A|1375
8G34|1|v|U|1376
8G34|1|v|A|1377
8G34|1|v|C|1378
8G34|1|v|G|1379

Current chains

Chain v

16S

Nearby chains

Chain f

30S ribosomal protein S7

Chain h

30S ribosomal protein S9