J3_8G38_002

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8G38|1|B|U|686, 8G38|1|B|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G38_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0814

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8G38|1|B|U|683
8G38|1|B|G|684
8G38|1|B|A|685
8G38|1|B|U|686
8G38|1|B|C|687
8G38|1|B|U|688
8G38|1|B|A|689
*
8G38|1|B|U|773
8G38|1|B|G|774
8G38|1|B|G|775
*
8G38|1|B|C|791
8G38|1|B|A|792
8G38|1|B|A|793
8G38|1|B|A|794

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2