J3_8G38_003

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G38_003 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1019

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8G38|1|B|C|698
8G38|1|B|A|699
8G38|1|B|G|700
*
8G38|1|B|C|732
8G38|1|B|G|733
8G38|1|B|A|734
8G38|1|B|A|735
8G38|1|B|C|736
*
8G38|1|B|G|760
8G38|1|B|A|761
8G38|1|B|U|762
8G38|1|B|G|763

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2