3D structure

PDB id
8G38 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
8G38|1|B|A|2518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G38_009 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.1209
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

8G38|1|B|C|2517
8G38|1|B|A|2518
8G38|1|B|U|2519
8G38|1|B|C|2520
*
8G38|1|B|G|2545
8G38|1|B|U|2546
8G38|1|B|A|2547
*
8G38|1|B|U|2561
8G38|1|B|U|2562
8G38|1|B|U|2563
8G38|1|B|A|2564
8G38|1|B|A|2565
8G38|1|B|A|2566
8G38|1|B|G|2567

Current chains

Chain B
23S

Nearby chains

Chain K
50S ribosomal protein L14

Coloring options:


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