3D structure

PDB id
8G38 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGG*CUUG*CG
Length
9 nucleotides
Bulged bases
8G38|1|v|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G38_030 not in the Motif Atlas
Geometric match to J3_5J7L_002
Geometric discrepancy: 0.1025
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8G38|1|v|C|586
8G38|1|v|G|587
8G38|1|v|G|588
*
8G38|1|v|C|651
8G38|1|v|U|652
8G38|1|v|U|653
8G38|1|v|G|654
*
8G38|1|v|C|754
8G38|1|v|G|755

Current chains

Chain v
16S

Nearby chains

Chain g
30S ribosomal protein S8
Chain k
30S ribosomal protein S12
Chain n
30S ribosomal protein S15
Chain p
30S ribosomal protein S17

Coloring options:


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