J3_8G4S_002
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- ACCG*CGCCGGCCG*CGCCU
- Length
- 18 nucleotides
- Bulged bases
- 8G4S|1|2|C|685
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G4S_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2341
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8G4S|1|2|A|632
8G4S|1|2|C|633
8G4S|1|2|C|634
8G4S|1|2|G|635
*
8G4S|1|2|C|679
8G4S|1|2|G|680
8G4S|1|2|C|681
8G4S|1|2|C|682
8G4S|1|2|G|683
8G4S|1|2|G|684
8G4S|1|2|C|685
8G4S|1|2|C|686
8G4S|1|2|G|687
*
8G4S|1|2|C|694
8G4S|1|2|G|695
8G4S|1|2|C|696
8G4S|1|2|C|697
8G4S|1|2|U|698
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S3a
- Chain N
- Ribosomal protein S13
- Chain O
- Ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
Coloring options: