J3_8G4S_003
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CCCG*CCCAG*CGGGAG
- Length
- 15 nucleotides
- Bulged bases
- 8G4S|1|2|G|832, 8G4S|1|2|A|834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G4S|1|2|C|788
8G4S|1|2|C|789
8G4S|1|2|C|790
8G4S|1|2|G|791
*
8G4S|1|2|C|819
8G4S|1|2|C|820
8G4S|1|2|C|821
8G4S|1|2|A|822
8G4S|1|2|G|823
*
8G4S|1|2|C|830
8G4S|1|2|G|831
8G4S|1|2|G|832
8G4S|1|2|G|833
8G4S|1|2|A|834
8G4S|1|2|G|835
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- 40S ribosomal protein SA
- Chain C
- Ribosomal protein S2
- Chain N
- Ribosomal protein S13
- Chain V
- 40S ribosomal protein S21
- Chain W
- SSU ribosomal protein S8P (Fragment)
- Chain a
- 40S ribosomal protein S26
- Chain b
- Ribosomal protein S27
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