J3_8G4S_011

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GG*CGGAACU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G4S_011 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1509

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8G4S|1|2|G|40
8G4S|1|2|G|41
*
8G4S|1|2|C|345
8G4S|1|2|G|346
8G4S|1|2|G|347
8G4S|1|2|A|348
8G4S|1|2|A|349
8G4S|1|2|C|350
8G4S|1|2|U|351
*
8G4S|1|2|A|376
8G4S|1|2|G|377
8G4S|1|2|C|378

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Ribosomal protein S9

Chain X

SSU ribosomal protein S12P