J3_8G5Y_029

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8G5Y|1|L5|G|959, 8G5Y|1|L5|C|962, 8G5Y|1|L5|G|965, 8G5Y|1|L5|C|967, 8G5Y|1|L5|C|968, 8G5Y|1|L5|C|969, 8G5Y|1|L5|U|971, 8G5Y|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Y|1|L5|C|712
8G5Y|1|L5|C|713
*
8G5Y|1|L5|G|955
8G5Y|1|L5|A|956
8G5Y|1|L5|G|957
8G5Y|1|L5|G|958
8G5Y|1|L5|G|959
8G5Y|1|L5|A|960
8G5Y|1|L5|G|961
8G5Y|1|L5|C|962
8G5Y|1|L5|G|963
8G5Y|1|L5|A|964
8G5Y|1|L5|G|965
8G5Y|1|L5|A|966
8G5Y|1|L5|C|967
8G5Y|1|L5|C|968
8G5Y|1|L5|C|969
8G5Y|1|L5|G|970
8G5Y|1|L5|U|971
8G5Y|1|L5|C|972
8G5Y|1|L5|G|973
8G5Y|1|L5|C|974
8G5Y|1|L5|C|975
8G5Y|1|L5|G|976
*
8G5Y|1|L5|C|1278
8G5Y|1|L5|A|1279
8G5Y|1|L5|C|1280
8G5Y|1|L5|G|1281
8G5Y|1|L5|G|1282
8G5Y|1|L5|G|1283
8G5Y|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32