J3_8G5Z_012

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CA(PSU)UCG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

8G5Z|1|L5|U|4989, 8G5Z|1|L5|C|4990

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Z|1|L5|C|4970
8G5Z|1|L5|A|4971
8G5Z|1|L5|PSU|4972
8G5Z|1|L5|U|4973
8G5Z|1|L5|C|4974
8G5Z|1|L5|G|4975
*
8G5Z|1|L5|C|4983
8G5Z|1|L5|C|4984
8G5Z|1|L5|U|4985
8G5Z|1|L5|G|4986
8G5Z|1|L5|C|4987
8G5Z|1|L5|U|4988
8G5Z|1|L5|U|4989
8G5Z|1|L5|C|4990
8G5Z|1|L5|U|4991
*
8G5Z|1|L5|A|5060
8G5Z|1|L5|A|5061
8G5Z|1|L5|G|5062
8G5Z|1|L5|G|5063

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31