J3_8G5Z_014
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- A(PSU)CUUGGGAGCGGGCGUCCCCGCCUU*A(PSU)(OMG)GAAUAGG*CAUGAU
- Length
- 42 nucleotides
- Bulged bases
- 8G5Z|1|S2|C|687, 8G5Z|1|S2|G|691, 8G5Z|1|S2|G|698, 8G5Z|1|S2|U|732, 8G5Z|1|S2|U|799, 8G5Z|1|S2|G|868, 8G5Z|1|S2|A|913
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G5Z|1|S2|A|685
8G5Z|1|S2|PSU|686
8G5Z|1|S2|C|687
8G5Z|1|S2|U|688
8G5Z|1|S2|U|689
8G5Z|1|S2|G|690
8G5Z|1|S2|G|691
8G5Z|1|S2|G|692
8G5Z|1|S2|A|693
8G5Z|1|S2|G|694
8G5Z|1|S2|C|695
8G5Z|1|S2|G|696
8G5Z|1|S2|G|697
8G5Z|1|S2|G|698
8G5Z|1|S2|C|730
8G5Z|1|S2|G|731
8G5Z|1|S2|U|732
8G5Z|1|S2|C|733
8G5Z|1|S2|C|734
8G5Z|1|S2|C|735
8G5Z|1|S2|C|736
8G5Z|1|S2|G|737
8G5Z|1|S2|C|738
8G5Z|1|S2|C|739
8G5Z|1|S2|U|799
8G5Z|1|S2|U|800
*
8G5Z|1|S2|A|865
8G5Z|1|S2|PSU|866
8G5Z|1|S2|OMG|867
8G5Z|1|S2|G|868
8G5Z|1|S2|A|869
8G5Z|1|S2|A|870
8G5Z|1|S2|U|871
8G5Z|1|S2|A|872
8G5Z|1|S2|G|873
8G5Z|1|S2|G|874
*
8G5Z|1|S2|C|912
8G5Z|1|S2|A|913
8G5Z|1|S2|U|914
8G5Z|1|S2|G|915
8G5Z|1|S2|A|916
8G5Z|1|S2|U|917
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- uS17
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- uS12
Coloring options: