J3_8G5Z_038

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8G5Z|1|L5|U|4882, 8G5Z|1|L5|A|4938, 8G5Z|1|L5|C|4940, 8G5Z|1|L5|A|4943, 8G5Z|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Z|1|L5|G|4751
8G5Z|1|L5|U|4752
8G5Z|1|L5|U|4753
8G5Z|1|L5|G|4754
*
8G5Z|1|L5|C|4879
8G5Z|1|L5|C|4880
8G5Z|1|L5|U|4881
8G5Z|1|L5|U|4882
8G5Z|1|L5|C|4883
*
8G5Z|1|L5|G|4936
8G5Z|1|L5|C|4937
8G5Z|1|L5|A|4938
8G5Z|1|L5|C|4939
8G5Z|1|L5|C|4940
8G5Z|1|L5|G|4941
8G5Z|1|L5|C|4942
8G5Z|1|L5|A|4943
8G5Z|1|L5|C|4944
8G5Z|1|L5|G|4945
8G5Z|1|L5|U|4946
8G5Z|1|L5|U|4947
8G5Z|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a