J3_8G60_025

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8G60|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G60|1|L5|C|196
8G60|1|L5|A|197
8G60|1|L5|A|198
8G60|1|L5|G|199
*
8G60|1|L5|C|215
8G60|1|L5|C|216
8G60|1|L5|C|217
8G60|1|L5|A|218
8G60|1|L5|G|219
8G60|1|L5|C|220
8G60|1|L5|C|221
8G60|1|L5|C|222
8G60|1|L5|G|223
8G60|1|L5|U|224
8G60|1|L5|G|225
8G60|1|L5|G|226
8G60|1|L5|A|227
8G60|1|L5|C|228
*
8G60|1|L5|G|240
8G60|1|L5|G|241
8G60|1|L5|U|242
8G60|1|L5|A|243
8G60|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

uL4

Chain LY

uL24