J3_8G60_039

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8G60|1|L5|U|4882, 8G60|1|L5|A|4938, 8G60|1|L5|C|4940, 8G60|1|L5|A|4943, 8G60|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G60|1|L5|G|4751
8G60|1|L5|U|4752
8G60|1|L5|U|4753
8G60|1|L5|G|4754
*
8G60|1|L5|C|4879
8G60|1|L5|C|4880
8G60|1|L5|U|4881
8G60|1|L5|U|4882
8G60|1|L5|C|4883
*
8G60|1|L5|G|4936
8G60|1|L5|C|4937
8G60|1|L5|A|4938
8G60|1|L5|C|4939
8G60|1|L5|C|4940
8G60|1|L5|G|4941
8G60|1|L5|C|4942
8G60|1|L5|A|4943
8G60|1|L5|C|4944
8G60|1|L5|G|4945
8G60|1|L5|U|4946
8G60|1|L5|U|4947
8G60|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

eL6

Chain LM

eL14

Chain LO

uL13

Chain Lf

eL33