3D structure

PDB id
8G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AGAUG*CAGU*AGGGUGUAAAU
Length
20 nucleotides
Bulged bases
8G6J|1|L5|U|2763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8G6J|1|L5|A|2551
8G6J|1|L5|G|2552
8G6J|1|L5|A|2553
8G6J|1|L5|U|2554
8G6J|1|L5|G|2555
*
8G6J|1|L5|C|2572
8G6J|1|L5|A|2573
8G6J|1|L5|G|2574
8G6J|1|L5|U|2575
*
8G6J|1|L5|A|2757
8G6J|1|L5|G|2758
8G6J|1|L5|G|2759
8G6J|1|L5|G|2760
8G6J|1|L5|U|2761
8G6J|1|L5|G|2762
8G6J|1|L5|U|2763
8G6J|1|L5|A|2764
8G6J|1|L5|A|2765
8G6J|1|L5|A|2766
8G6J|1|L5|U|2767

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LZ
60S ribosomal protein L27

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3558 s