J3_8G6J_011

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUC*GU(PSU)(OMG)G*CCACUAAUA

Length

18 nucleotides

Bulged bases

8G6J|1|L5|A|4464, 8G6J|1|L5|U|4465

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6J|1|L5|U|4463
8G6J|1|L5|A|4464
8G6J|1|L5|U|4465
8G6J|1|L5|C|4466
*
8G6J|1|L5|G|4491
8G6J|1|L5|U|4492
8G6J|1|L5|PSU|4493
8G6J|1|L5|OMG|4494
8G6J|1|L5|G|4495
*
8G6J|1|L5|C|4505
8G6J|1|L5|C|4506
8G6J|1|L5|A|4507
8G6J|1|L5|C|4508
8G6J|1|L5|U|4509
8G6J|1|L5|A|4510
8G6J|1|L5|A|4511
8G6J|1|L5|U|4512
8G6J|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23