Loop J3_8G6J

3D structure

PDB id: 8G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description: mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Loop

Sequence: A(PSU)CUUGGGAGCGGGCGUCCCCGCCUU*A(PSU)(OMG)GAAUAGG*CAUGAU
Length: 42 nucleotides
Bulged bases: 8G6J|1|S2|C|687, 8G6J|1|S2|G|691, 8G6J|1|S2|G|698, 8G6J|1|S2|U|732, 8G6J|1|S2|U|799, 8G6J|1|S2|G|868, 8G6J|1|S2|A|913
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8G6J|1|S2|A|685
8G6J|1|S2|PSU|686
8G6J|1|S2|C|687
8G6J|1|S2|U|688
8G6J|1|S2|U|689
8G6J|1|S2|G|690
8G6J|1|S2|G|691
8G6J|1|S2|G|692
8G6J|1|S2|A|693
8G6J|1|S2|G|694
8G6J|1|S2|C|695
8G6J|1|S2|G|696
8G6J|1|S2|G|697
8G6J|1|S2|G|698
8G6J|1|S2|C|730
8G6J|1|S2|G|731
8G6J|1|S2|U|732
8G6J|1|S2|C|733
8G6J|1|S2|C|734
8G6J|1|S2|C|735
8G6J|1|S2|C|736
8G6J|1|S2|G|737
8G6J|1|S2|C|738
8G6J|1|S2|C|739
8G6J|1|S2|U|799
8G6J|1|S2|U|800
*
8G6J|1|S2|A|865
8G6J|1|S2|PSU|866
8G6J|1|S2|OMG|867
8G6J|1|S2|G|868
8G6J|1|S2|A|869
8G6J|1|S2|A|870
8G6J|1|S2|U|871
8G6J|1|S2|A|872
8G6J|1|S2|G|873
8G6J|1|S2|G|874
*
8G6J|1|S2|C|912
8G6J|1|S2|A|913
8G6J|1|S2|U|914
8G6J|1|S2|G|915
8G6J|1|S2|A|916
8G6J|1|S2|U|917

Current chains

Chain S2: 18S rRNA

Nearby chains

Chain LR: 60S ribosomal protein L19
Chain SH: 40S ribosomal protein S7
Chain SL: 40S ribosomal protein S11
Chain SN: 40S ribosomal protein S13
Chain SW: 40S ribosomal protein S15a
Chain SX: uS12

J3_8G6J_014