J3_8G6J_048

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(PSU)(PSU)AAU(PSU)(PSU)*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

8G6J|1|S2|G|1256, 8G6J|1|S2|A|1258, 8G6J|1|S2|A|1260

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G6J_048 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.1724

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8G6J|1|S2|C|1237
8G6J|1|S2|PSU|1238
8G6J|1|S2|PSU|1239
8G6J|1|S2|A|1240
8G6J|1|S2|A|1241
8G6J|1|S2|U|1242
8G6J|1|S2|PSU|1243
8G6J|1|S2|PSU|1244
*
8G6J|1|S2|G|1255
8G6J|1|S2|G|1256
8G6J|1|S2|G|1257
8G6J|1|S2|A|1258
8G6J|1|S2|A|1259
8G6J|1|S2|A|1260
8G6J|1|S2|C|1261
8G6J|1|S2|C|1262
8G6J|1|S2|U|1263
8G6J|1|S2|C|1264
8G6J|1|S2|A|1265
8G6J|1|S2|C|1266
*
8G6J|1|S2|G|1516
8G6J|1|S2|G|1517
8G6J|1|S2|C|1518
8G6J|1|S2|U|1519
8G6J|1|S2|G|1520

Current chains

Chain S2

18S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a