J3_8G6Y_016

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8G6Y|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G6Y_016 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0422

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G6Y|1|a|G|297
8G6Y|1|a|G|298
8G6Y|1|a|A|299
8G6Y|1|a|A|300
8G6Y|1|a|G|301
*
8G6Y|1|a|C|316
8G6Y|1|a|G|317
8G6Y|1|a|C|318
8G6Y|1|a|G|319
8G6Y|1|a|A|320
8G6Y|1|a|U|321
8G6Y|1|a|A|322
8G6Y|1|a|C|323
8G6Y|1|a|A|324
8G6Y|1|a|G|325
*
8G6Y|1|a|C|337
8G6Y|1|a|G|338
8G6Y|1|a|U|339
8G6Y|1|a|A|340
8G6Y|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24