J3_8G7Q_002

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7Q_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.077

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8G7Q|1|A|C|698
8G7Q|1|A|A|699
8G7Q|1|A|G|700
*
8G7Q|1|A|C|732
8G7Q|1|A|G|733
8G7Q|1|A|A|734
8G7Q|1|A|A|735
8G7Q|1|A|C|736
*
8G7Q|1|A|G|760
8G7Q|1|A|A|761
8G7Q|1|A|U|762
8G7Q|1|A|G|763

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2